I will here describe
animal cells and proceed to describe immune cells.
In the non-medical
communities, which I encounter, there is remarkably little understanding
of the immune system.
For this reason,
I am supplying much information to counter notions that the immune system
is weak or not working!
Skin, intestinal
and respiratory linings have physical barrier, secretory and chemical
protective systems.
Since we have described
prokaryotes we can specify that animal cells including human cells are
eukaryotes (eu means "true").
They contain a nucleus,
mitochondria, rough and smooth endoplasmic reticulum, Golgi complexes,
lysosomes, peroxisomes and also ribosomes.
Cells start as stem
cells and each line of cells proceeds to mature cell formation.
The following description
provides basic understanding of a major arm of the immune system. (The
cells and their products)
Specific immune
cells exist for an array of functions. Signalling molecules and their
receptors remain central to the orchestration of adequate immune protection.
Dendritic cells
and macrophages, and Toll-like receptors (TLRs)
I will introduce
these cells, which were first known to respond to microbial organisms
which enter them,
by breaking them up, but are now known to have recognition receptors
(Toll-like receptors), collectins and ficolins, activation chemicals
(cytokines) and ability to make molecules, which present lymphocytes
with processed antigens.
Collectin refers
to collagen-like molecules with a lectin domain.
At this point I
will elaborate recent research into Toll receptors, because this represents
the conservation of an ancient life form defence against pathogens.
It is described
as an innate immune system
Toll
is the German word for weird. A fruit fly, Drosophila, makes
a protein which helps the embryonic form differentiate its top from
its bottom.
Flies lacking the
gene were weird looking.
In 1991, Nick Gay
at University of Cambridge discovered that the inner part of the human
interleukin-1 (IL-1) receptor resembled the sequences of this Toll protein.
Hoffmann and colleagues
at Strasbourg showed that Drosophila used the toll protein to defend
against fungal attack.
In due course it
has been found that flies, starfish, water fleas, nematodes and plants
all have many Toll-like receptors (TLRs).
These receptors
have been specified and human beings have at least 10 TLRs.
TLRs are also responsible
for the induction of dendritic cell maturation, which is responsible
and necessary for initiation of adaptive immune responses.
Each one is involved
in recognition of specific microbial chemicals.
They seem to work
in pairs. One part of the TLR molecule protrudes from the outside of
the cell membrane, and each inner part gives rise to specific molecular
sequences inside the cell.
Different cells
have different combinations of these TLRs.
A TLR1 in combination
with TLR2 binds to uniquely bacterial lipopeptides (lipid-protein
combinations) and to molecules called GPI-anchored proteins in parasites.
A TLR2 paired
with TLR6 binds to lipo-techoic acid in gram-positive bacteria, and
zymosan in fungi.
TLR3 recognizes
genetic material from viruses.
Two TLR4s paired
bind to lipopolysaccharide from gram-negative bacteria.
A TLR5 binds to
flagellin in the tails of motile bacteria.
TLR9 recognizes
a signature genetic sequence called CpG in both bacteria and viruses,
(distinct from mammalian CpG sequences.)
It appears that
it is difficult for pathogenic organisms to avoid these TLRs.
The functions
of TLR10 and the partners of TLR3, 5, 7,8 and 9 are presently unknown.
Once the microbial
chemical triggers the receptor, the cell makes specific cytokines, which
signal other consequences, including recruiting other cell responses
and gene activations.
The specific responses
by the lymphocytes are described in the next section.
All the TLRs perhaps
excepting TLR3 hand the signal to an adapter protein called MyD88.
TLR2 and 4 are
helped to signal via a protein called Mal.
TLR3 relies upon
a protein called Trif, and TLR4 also requires Trif and Tram proteins.
TLR3 and 7 which
recognize viruses produce sequences leading to release of interferons.(antiviral
cytokines) (e.g. TLR3 binds to double-stranded RNA like West Nile
virus, while TLR7 binds to single stranded RNA such as HIV)
TLR8 binds to
single-stranded viral DNA.
TLR2 activated
by bacteria, results in release of different cytokines.
People with an
underactive form of TLR4 are 5 times as susceptible to bacterial infections.
People with defective
TLR5 due to a mutation are much more susceptible to Legionnaires disease.
Overactive TLR4
seems to lead to autoimmune diseases.
In systemic lupus
erythematosus, TLR9 reacts to the bodys own DNA.
There is considerable
potential to deal with diseases by altering TLR responses.
TLR activators:
TLR4 activator.
(MPL for allergy treatment and vaccine adjuvant)
TLR7 activator.
ANA245 (isatoribine) is being trialled for hepatitis C.
TLR7&8 activator.
Imiquimod is antiviral for viral warts and reverses basal cell carcinoma.
TLR9 activator.
Promune is a vaccine adjuvant and is used in treatment of melanoma
and non-Hodgkins lymphoma.
TLR inhibitors:
TLR4 inhibitor.
E5564 anti-sepsis trials.
General TLR inhibitor.
(1) RDP58 for
ulcerative colitis and Crohns disease.
(2) OPN201 for
auto-immune disorders.
These therapies
are likely to need a good deal, of care and understanding of pros and
cons.
Laboratory identification
of vulnerable people at several levels (e.g. HLA haplotypes and Toll
receptor status) could be very productive of better therapies.
Mannose binding
lectin
I turn to mannose
binding lectin, which came to light with an infant who was prone to
bacterial infections, and was found to be deficient in a factor required
for pathogen opsonisation.
Mannose binding
lectin (MBL) activates complement in an antibody independent fashion.
There are several
common inherited polymorphisms in the MBL gene, and the clinical patterns
seem to be of susceptibility to infection and autoimmune disorders.
This activation
is triggered when macrophages detect certain organisms, and in response
secrete interleukin-6 which is carried in the blood to the liver, evoking
release of the MBL, an acute phase protein
The gene which codes
for it is called MBL2, and is located on chromosome 10.
The missence mutations
have now been documented, and are common.
I mention the amazing
significance of certain peptide dimers. trimers and oligomers.
In this case, a
trimeric configuration allows each peptide to perform certain functions.
Each peptide has
a C terminal calcium-dependent lectin domain, which recognizes repetitive
oligosaccharide moieties on a wide array of pathogens.
Functional MBL circulates
as oligomers, allowing interaction with the microbial saccharides to
give rise to conformational changes in the MBL and activation of mannose
associated serine proteases (MASP)
This function is
quite similar to initiation of the classical complement pathway C1q.
As mentioned mutations
are common and either homozygosity or compound heterozygosity can give
low serum levels of MBL.
The reasons for
the high prevalence are so far not clear, and studies are underway to
clarify susceptibility to meningococci, streptococci and staphylococci.
Vulnerability to
HIV and probably Hepatitis B appears to be increased with MBL deficiency.
MBL recognizes mannan
in fungal cell walls and again deficiency seems to make subjects more
susceptible to fungi.
Recombinant MRB
has been produced, but studies are at an early stage.
I will elaborate
other functions of dendritic cells and macrophages later.
Lymphocytes
Immune cells are
divided into thymus-derived cells (T lymphocytes) and bursa-derived
(B lymphocytes) which respectively are involved in cell mediated and
humoral (antibody) mediated immunity.
The body is patrolled
by billions of T cells of which the majority appear to be dormant.
T cells must not
launch attacks on the host's own cells.
In the development
of T cells, mechanisms are set up that ensure that this does not happen.
In some diseases there is a breakdown in these mechanisms.
ANTIGEN RECOGNITION AND T CELL ACTIVATION.
Antigens are generally peptide sequences, polysaccharides or nucleotides
from outside the body (non-self)
T cells require
2 signals for activation.
(1) Signal 1 is
antigen-receptor ligation.
(2) Signal 2
for B cells and cytotoxic T cells is delivered by helper T cells,
and for helper T cells is delivered by the antigen presenting cell.
ANTIGEN-PRESENTING
CELLS
T cells recognize
antigens only on the surfaces of antigen-presenting cells (APCs).
Macrophages and
dendritic cells.
These are the antigen
processing and presenting cells. (Ephraim Fuchs1997)
The ligand for
the T cell receptor is generated by the APC through processing and presentation
of the antigen.
Foreign proteins
in intracellular compartments are degraded into peptide fragments and
these peptides then associate with the specialized antigen-presenting
molecules encoded by the highly polymorphic genes of the MHC.
The MHC-peptide
complex is exported to the cell surface, and the T cell receptor.is
then ligated by a complex determinant.
Macrophages are
thus crucial cells for the processing and presentation of antigens.
Some intracellular
pathogens have the capacity to delay or prevent maturation of phagosomes
in the macrophage.
Work by deCC, Thilo
L in Paris showed that after infection of macrophages with mycobacterium
avium, phagosomes became depleted in membrane components and through
interchange of constituents, early endosomes also became depleted.
Ordinarily the phagosomes
are microbicidal organelles
Numerous pathogens
such as Toxoplasma gondii, Coxiella burnetii, Leishmania, mycobacteria,
salmonella, and Legionella species can thrive in macrophages, evading
lysosomal degradation and even multiplying. (Amor and Swanson)
Dendritic cells
These cells have
long arms or dendrites and are found in many sites including skin (here
they are called Langerhans cells) and mucous membranes.
They have stem cell
precursors in the monocyte line, as do macrophages.
Some capture invading
microorganisms, engulfing them in vacuoles.
They are highly
efficient in capturing and presenting antigens, and activate T helper
cells and T cytotoxic cells.
Researchers are
interested in the role of particular subsets of these cells in setting
the type 1 and 2 (TH1 and TH2) T cell responses as described below.
Some dendritic cells
can produce interferon a.
A subset of dendritic
cells make DC-SIGN, a molecule which can bind to the outer coat of the
human immunodeficiency virus.
Other infectious
agents can alter dendritic cell responses.
Malarial parasites
bind to dendritic cells and prevent them from maturing.
Some of the herpes
virus family such as cytomegalovirus also interfere at this level.
MHC MOLECULES
MHC class 1 molecules
are expressed on the surfaces of almost all nucleated cells, and present
peptides consisting of mainly 8-11 amino acids. The MHC-peptide complex
is formed in the endoplasmic reticulum and is brought to the cell surface
for recognition by CD8+ T cells.
MHC class 2 molecules
present mainly 12 -24 amino acid length fragments that have been taken
in from outside the cell. The class 2 proteins are expressed on the
surface of a limited number of cell types, thymic epithelium, B lymphocytes,
activated macrophages and dendritic cells.
The peptides are
generated in and associate with class 2 molecules in endocytic vesicles
and are brought to the surface for recognition by CD4 + T cells.
TH1 and TH2 setting.
During the description
of T cell transformations researchers describe T helper cells being
set into TH1 or TH2 states.
This setting of
T cells into the TH1 or TH2 states may turn out to be extremely important.
T helper cells
termed TH1 cells appear to be involved in getting T cells to attack
intracellular organisms, but are also involved in diseases such as multiple
sclerosis and juvenile onset diabetes, whereas T helper cells being
set in TH2 forms appear to be involved in antibody production and in
allergy.
In autoimmune diseases
not only are there genetic markers, which influence the kind of immune
response, but also there appear to be factors evoking greater dendritic
cell activity and a higher tendency to ingest DNA and result in varieties
of anti nuclear antibodies. One such stimulus is increased production
of interferon alpha
There are specific
cytokines associated with these cells.
TH1 cells produce
interleukin2 (IL2), IL6, tumour necrosis factor alpha (TNFa), and interferon
gamma (IFg).
TH2 cells produce
interleukin4 (IL4), interleukin 10(IL10), and probably interleukin5
(IL5).
If a dendritic cell
provokes the wrong kind of response in T cell and cytokine profile,
the outcome can be persistent disease.
With leprosy, a
type 1 response leads to a mild tuberculoid form of the disease, but
a TH2 response gives the more serious lepromatous disease.
Specific ratios
of TH1/TH2 cells occur and the above associated cytokines are released.
This TH1/TH2 description is probably over-simplified.
In clinical practice
we need to be able to assess T cell activity and cytokine production,
but at present it is not a routine form of testing.
We need to consider
the likelihood that infectious viruses and bacteria have evolved defence
molecules that divert the immune system, thus enabling them to keep
a pathological process going.
As well dendritic
cells can be harvested from cancer patients and grown in a laboratory
with tumour cell antigens. Reinjected with their processed antigen,
they evoke enhanced immunological activity against the cancers (particularly
melanoma)
Cytokines that activate
dendritic cells also may have a place in the future.
To summarize the
above, a crucial requirement is for immune cells to recognize and read
specific antigens from microorganisms and other foreign materials. This
recognition involves macrophages producing an antigen presenting protein,
which attaches to some peptide groups on the antigen and allows T cell
receptors that are specific to other groups on the antigen to allow
specific clones of T cells to be activated. As well the macrophage phagosomes
are important in the lysis of microbes inside the cell.
Activated T cells
can be characterized by laboratory measurement of surface markers.
Glycoproteins are
a crucial component of the recognition mechanism. The arrangements of
these glycoproteins give the specificity of the surface markers. CD
means "cluster determinant" and from here on we can explain
specificities of cells by their CD classification.
T helper and
T cytotoxic cells.
T cells can be divided
into T helper cells (CD4 cells), and cytotoxic T cells (some of these
have CD8 surface markers.)
Cytotoxic T cells
tend to shift into a TH1 state and are concerned with dealing with intracellular
infections.
T suppressor
cells
There are also T
suppressor cells, with capacity to decrease the risk of immune reactions
towards self. Sakaguchi at Kyoto university in Osaka found T cells with
CD4 markers which also possessed CD25 molecules.
These cells can
decrease activity of killer T cells possibly by their responses to TGFb
and IL10.
T suppressor cells
have a surface receptor called glucocorticoid-induced TNF receptor(GITR.)
Blocking this receptor
has evoked tumour reduction in mice.
Vitamin D deficiency
may result in poorer T suppressor cell function in auto-immune diseases.
D deficiency worsens the outlook in tuberculosis.
In some circumstances
the activity of these suppressor cells may decrease the effectiveness
of other T cells against intracellular infections and also malignant
cells.
In mouse experiments
antibodies that blocked TGFb and IL10 blocked tumour s/leukaemia induced
by Friend leukaemia virus, and reduced CD25 cells.
(Also CD8 cells.)
T natural killer
cells
Natural killer (NK)
cells are large granular lymphocytes, which kill target cells that express
little or no HLA class1 molecules.
Such target cells
are virally affected cells and malignant cells. NK cells express receptors
that inhibit killer cell function when self-MHC class1 is present.
Darryl See cites
the T (NK) cells as improving in function, when CFS sufferers consume
glyconutrient supplements.
I have not found
other literature to support this claim.
We can now link
immune cell abnormalities, viral/cell interaction and cytokine release
with the metabolic abnormalities in C.F.S.
VIRAL PERSISTENCE
AND SUBVERSION OF IMMUNE CELL MECHANISMS.
Dr Darryl See, trained
in microbiology and immunology and working at the University of California
at Irvine, has identified high loads of HHV6, and impaired NK cell (cytotoxic
T cell) function in C.F.S. Once more there is a need for someone to
validate this claim.
Konnie Knox and
Donald Carrigan in Milwaukee also report identifying HHV6 in CFS patients.
HHV6 has genes which
modulate the immune system and it is estimated that up to 1/3 of the
genome of some herpes viruses could be devoted to this kind of avoidance
or subversion of immune mechanisms.
The prevalence of
these infections in adults is unclear, and most laboratories only check
serology for HHV6.
More on CMV
Cytomegaloviruses
continue to attract a large amount of research.
How do they evade
immune defences?
Interference with
antigen presentation
Expression of the
HCMV matrix protein pp65 (UL83) results in several phosphorylated proteins
or peptides. Phosphorylated threonine residues within immediate-early
proteins may severely restrict access of the proteins to proteasomal
degradation or divert it to a different pathway. (Gilbert et al 1993,1996)(Schmolke
et al 1995)
Peptides pass the
membrane of the endoplasmic reticulum (ER) through translocation by
the transporter associated with antigen presentation (TAP) for assembly
into ternary MHC class1 complexes.
Expression of the
HCMV-encoded unique short 6 (US6) gene product results in inhibition
of TAP, and peptide translocation is thereby inhibited.
Some other herpes
viruses are also able to block TAP.
HCMV expression
of US3 protein also impairs maturation and intracellular transport
of MHC class 1 heavy chains, which gets trapped in the ER instead
of proceeding to the cell surface.
HCMV gene products
US2 and 11 result in degradation of MHC class 1 molecules.
Down regulation
of MHC class 2 expression or function
HCMV and MCMV
are able to interfere with CD4+ T -cell recognition of infected cells
by inhibition of MHC class 2 peptide presentation on endothelial and
epithelial cells.
When this happens
in CMV infected macrophages, the CD4+ T cells appear to be unable
to recognize those macrophages
Early CD4+T-cell
activity influences CD8+ T-cell activity which is crucial for control
of viral diseases.
Interference with
NK cell mediated killing
HCMV and MCMV
can induce a functional paralysis of dendritic cells.
NK cells express
both activating and inhibitory surface receptors.
HCMV express MHC
homologues that engage killer cell inhibitory receptors (KIRs) and
function as viral decoys to prevent NK cytotoxicity.
(E.g. HCMV encodes
gpUL18 ,an extensively glycated type 1 TM protein which has an amino
acid identity sequence of approximately 21% with human polymorphic
MHC class molecules.
Mutated cytomegaloviruses
and the simian CMV are strong candidates for a similar role in CFS
and related illnesses.
This work has been
developed by Dr W John Martin in Rosemead, California.
Martin claims his
data includes cytopathic effects produced by CFS patient's serum of
cells in vitro, and also extensive polymerase chain reactions (PCRs)
on the viral material.
He has further identified
a simian (green monkey) CMV in some of his CFS patients. (See later)
The problem is that
no one else seems to have replicated this work.
It would be difficult
to suppose that other herpes viruses do not have similar actions.
Dorries cites examples
of viruses escaping T cell-mediated eradication by various means, including
interference with the MHC class1 presentation pathway of the host cell,
or hiding in cells which lack MHC class 1 expression.
This may result
in life-long persistence of the virus in some locations, such as the
brain.
GENETICS AND
T CELLS.
One genetic element
is the encoding of "recognition" molecules by specific HLA
complex genes.
By analogy, in rheumatoid
arthritis, HLA-DR4 determined by a specific gene is involved in binding
of foreign peptides and facilitating their presentation to specific
T lymphocytes.
Closer examination
revealed that the class II DR markers for rheumatoid arthritis (DRb*0401
and DRb*0404 have a similar sequence of amino acids in the third hypervariable
region of the b chain.
It seems likely
that there are polygenic determinants of many common diseases interplaying
with environmental influences and pathogen exposures. (E g Type 1 diabetes)
It may emerge that
one such interplay can occur through lectins in common foods such as
grains, when peptide sequences in these proteins are not broken down
enough. (Cordain)
Lectins are relatively
resistance to digestion.
Amino acid sequences
which are like those of antigens, may evoke immune cell recognition,
and undesirable consequences.
A glycine-rich cell
wall protein (GRP) in cereals and legumes has a 15 amino acid sequence
in common with collagen, procollagen, and E B virus nuclear antigen
1, and can stimulate T lymphocytes.
This may mean that
we need to think beyond gluten in terms of wheat intolerance.
Recently a CMV peptide
sequence has been associated with auto-immune disorders.
The situation of
pregnancy allows male or female cells from the foetus to enter the mother's
body, and this may be yet another factor which gives rise to a higher
prevalence of auto-immune diseases in females.
As well with seeds
and cereals, lectin binding to glycans on brush borders of cells may
lead to damage to villi and change gut wall permeability to lectins
and other substances.
Such phenomena may
be important in inflammatory bowel disease and rheumatoid arthritis,
but also in CFS sufferers.
Some dairy product
proteins are also suspect in CFS. (E.g.Analogy being A1 beta casein
increasing risk of in type I diabetes)
This claims is still
being disputed!
B CELLS AND
ANTIBODIES.
The other crucial
lymphocytes are called B cells. These make specific antibodies in response
to reading virus particles. T helper cells can signal these cells to
become active in the humoural part of immune defence.
This is a crucial
aspect of how the body deals with extracellular infectious organisms.
Antibodies are immunoglobulins.
The binding of antibodies to virus enables destruction of viruses to
occur.
The receptors on
B cell surfaces bind portions of whole molecules in their native or
denatured conformation.
The portion of the
molecule that is bound by antibody is called the determinant or epitope.
A fascinating rearrangement
of the hypervariable region of the immunoglobulin molecule enables the
antibody to be highly specific in it's binding to the antigen.
CELL SIGNALLING
- CYTOKINES AND INTERLEUKINS
Literally meaning
"cell activating" or regulating, cytokines are soluble proteins
produced by a variety of cells, involving signalling to other cells,
in regulation of growth, development and activation of these other cells.
In the immune system this is a crucial part of the function of the system,
as well as mediating the inflammatory response.
Many cytokines are
capable of acting on many different cell types.
There appear to
be different cell types of receptors for the same cytokine.
Categorization of
cytokines is difficult because of over-lapping functions.
In general cytokines
influence gene activation, which results in cellular activation (often
specific protein activation), cell growth, differentiation, functional
cell surface molecule expression and cellular effector functions.
The cytokine milieu
can influence whether we make a cytotoxic or antibody response to a
particular antigen.
Some chemical messengers/lytic
proteins seem to be slightly different from these cytokines.
These include perforin
and granzymes.
These are known
to play a role in some situations of apoptosis.
Cytotoxic T lymphocytes
mediate lysis of target cells by various mechanisms, including exocytosis
of lytic proteins (perforin, granzymes) and receptor-ligand binding
of Fas/APO molecules.
Death of target
cells is characterized by either necrosis or apoptosis, depending on
the killing mechanism used and on the metabolism of the target cell
itself.
We return to the
subject of receptors.
CYTOKINE RECEPTORS
The receptor is
a specific structure located on the cell membrane. It is made of glycoprotein.
These are grouped
into 5 families.
Specific cytokine
receptors are responsible for ligand specific binding.
a) Ig superfamily
(IL1)
b) Cytokine/haematopoietic
growth factor (Type 1) receptor family (IL6, IL2, IL4)
c) IFN (type II)
receptor family (IFN alpha)
d) TNF (type III)
receptor family (TNF)
e) Seven transmembrane
helix family (chemokines) (B adrenergic receptors)(Harrison's textbook
of Medicine)
A whole cascade
of signalling ensues in the course of, for example, an inflammatory
illness.
G protein-coupled
receptors (GPCRs) initiate diverse down-stream signaling events in response
to ligand stimulation, as rapid activation of the extracellular signal-regulated
kinase ERK1 and ERK2.
Monocyte chemotactic
protein-1 (MCP-1) binds its G-protein-coupled seven transmembrane (TM)
receptor, CCR2B, and causes infiltration of monocytes/macrophages into
areas of injury, infection or inflammation.
This is very significant
in TH1 type diseases.
Cytokines and chemokines
have been implicated in the pathogenesis of Type 1 diabetes mellitus
(T1DM) and its microvascular complications. Recently, genetic variants
of monocyte chemotactic protein-1 (MCP-1), CC-chemokine receptor 2 (CCR2),
CC-chemokine receptor 5 (CCR5) genes have been identified.
The following section
on interleukins is merely to illustrate some details of what may happen
when particular cytokines interplay with their targets.
INTERFERONS
Chemicals called
interferons, which can be produced by all human cells, induce at least
3 types of antiviral effects.
(1) Induction
of 2'-5' oligo A synthetases (synthases) (requires double stranded
RNA for activation). When activated, the synthase polymerizes oligo
A and activates RNAse L, which degrades single strand RNA of viruses.
Increased levels
of 2'-5' oligo A synthase has been identified in one study of chronic
fatigue syndrome.
Increased RNAse
L of a particular molecular size seems to be a marker of interferon
activity.
Normal RNAse L
is an 83kDa polypeptide.
Suhadolnik and
colleagues found that mononuclear cells in the blood of chronic fatigue
sufferers had a 37 kDa form of RNAse L not found in controls and Mordechai
found that chronic fatigue syndrome sufferers had a deficiency in
an inhibitor of RNAse L.
De MeirLeir, Bisbal
and colleagues found decreased levels of both normal 83kDa RNAse L
and increased levels of37kDa RNAse L in CFS sufferers.
The ratio of the
37 kDa to 83 kDa forms was high in 90% of the CFS patients compared
with 1% of normal subjects, and none of the depressed and fibromyalgia
control patients
They note (in
2001) that type 1 interferons elicit apoptotic responses in targeted
cells by inducing the expression of 2,5 oligo A synthetase, RNAse
L and the p68 RNA dependent kinase (PKR)
Cell produced
or pathogen produced elastases may cleave the large form ,producing
the small form.
(2) Activated
PKR induces apoptosis by translation (through eIF2 phosphorylation)
Induction of PKR (a serine and threonine kinase which is also activated
by double strand RNA).
The PKR phosphorylates
and negatively regulates the translational initiation factor e IF
2 alpha shutting down protein synthesis in the infected cell, and
by a mechanism involving activation of caspase 8 mediated by the fas
associated death domain.
When an infected
cell is injured it may be better for it to self-destruct (apoptosis).
(3) Induction
of Mx proteins, a family of GTPases that inhibit replication of influenza
virus.
Other cytokines
almost certainly play a part in chronic fatigue. Many cell types in
acute phase response make IL1. IL2 is involved in T cell activation.
I have mentioned
the specific TH1 and TH2 cytokines
Activated macrophages
can produce TNFa
TNFa and b are small
non-glycosylated proteins.
IL6, TNF alpha and
Interferon gamma appear to have important roles in inflammation, fever
and other cell activations.
They also down regulate
the PPAR gene and products.
Polymorphisms of
the genes for these cytokines and IL10 may increase the risk of certain
disease manifestations.(and decrease the risk of other diseases.)
Interleukins act
on the previously mentioned specific interleukin receptors in cells
.
In these ways specific
T cells can signal other cells such as macrophages and B cells (which
make antibodies) to shape activity in those cells.
In diseases, the
interleukins, or perhaps their receptors, may also be subject to pathological
processes.
It is anecdotal
but many people with chronic fatigue seem to have been through a high
level of stress prior to the onset of the condition.
Of interest is the
report that in influenza underlying stress increased the production
levels of interleukin 6.
Several intracellular
pathogens evoke increased levels of IL10, which can inhibit the capacity
of monocytes and macrophages to induce T cell activation.
IL10 is a very important
cytokine with strong immunosuppressive and antiinflammatory activities.
It is a cofactor
for growth and differentiation of B cells, mast cells, and some T cells.
It is secreted by
activated T cells, B cells and monocytes and binds to its specific receptor
on all haemopoietic cells.
It inhibits T cell
production of IL2.
A homologue of IL10
was found in the genome of HCMV, and this inhibits a number of immune
functions.
There are circumstances
where particular interleukins play a helpful role in body maintenance
in the face of pathogen attack and chemical injury and the specific
sites of interleukin release and the balance between interleukins significantly
shapes disease processes.
Many studies have
shown some increase in particular interleukins in chronic fatigue syndromes
but there is not enough consistency to be sure as to whether high or
low levels of particular interleukins correlate with the syndrome.
HEAT SHOCK PROTEINS
(HSPs)
For about 50 years,
there has been awareness of cell products of heat exposed organisms
(initially fruit flies).
It is now clear
that these ubiquitous molecules have many roles in evolution, in influencing
individual cells, and in defences against cancer and pathogens.
They are also called
chaperones in that they have roles in inhibiting undesirable interactions
and in promoting desirable ones.
HSPs tend to associate
with a wide range of client proteins (not like the specificity of ligands
with receptors.)
In particular they
are associated with specific protein folding,dismantling of damaged
proteins, and escorting them away from unwanted locations.
Proteins are assembled
in ribosomes from DNA transriptions on to messenger RNA.
They need to be
delivered to particular sites at particular times., and with a correct
shape.
There are a number
of properties of amino acids(AAs) which enable them to connect.
Hydrophobic amino
acids nestle inside protein structures (away from water), while hydrophilic
amino acids tend to face outwards.
The HSP 60 is cage
like and helps by having an inner hydrophobic site for hydrophobic AAs,
and the protein shape folds to optimise its shape.
Scientist coin names
fro these HSPs (foldases)
HSP70 by contrast
is an unfoldase!
Many HSPs are not
like cages, but grab AA sequences by their elbows
ALLERGY
There have been
a number of reports on higher prevalence of some allergic states in
chronic fatigue syndromes. Cytokines released in allergy play significant
roles in the genesis of some of the clinical features.
It is interesting
to ask about what it is that diverts some T cells to the TH2 path, or
what prevents such a diversion.
Certain pathogens
probably possess genes that can activate a diversion of host responses
into particular patterns.
Inhaled allergens
can increase intercellular adhesion molecule (ICAM1) receptor expression
on respiratory epithelium and this receptor is used by rhinoviruses
to gain entry into mucosal cells.
This opens up therapies
which down regulate ICAM1 receptors in allergic diseases (e.g. antihistamines
and corticosteroids)
I hope that this
chapter will help the reader to avoid using terms like weak immune
system, and appreciate the complexity and elegance of this biological
system.